Out of 64 pairs isolated we retrieved 19 sets of clones in which both

sides of the separated cells continued to grow. They were then cultured in 1× SPP containing 1 μg/mL CdCl2. Because the expression of HA-Cre1p severely inhibits the growth of Tetrahymena, one side of the clones in each set was expected to grow slowly in the presence of CdCl2. Indeed, in 13 out of the 19 sets of the clones studied, severe growth suppression was detected in one side of Barasertib purchase the clones. In the other 6 sets, both sides of cells grew at equal speed. These are likely to represent progeny cells and were not analyzed further. Figure 4 N-terminal EGFP-tagging of ITF2357 TWI1 using Cre/loxP system. (A) A scheme of induction of Cre-mediated loxP recombination and selection of loxP-EGFP-TWI1 cells. See text for details. (B) loxP excision analysis by PCR. Total genomic DNA was extracted from 13 presumptive loxP-EGFP-TWI1 strains and analyzed by PCR using the primers shown in Fig. 3A. The products corresponding to the non-excised loxP-neo4-loxP-EGFP-TWI1 locus (+neo4) and the excised loxP-EGFP-TWI1 locus (-neo4) are marked by arrows. We expected that the clones growing poorly in the presence of CdCl2 were derived from the CRE556 strain, while the normally growing clones originated from the loxP-neo4-loxP-EGFP-TWI1

strain. Genomic DNA was extracted from the latter clones and excision of the neo4 cassette was observed by PCR. As shown in Fig. 4B, the PCR product corresponding PIK3C2G to the neo4-excised loxP-EGFP-TWI1 locus was observed in 10 out of 13 clones studied. This result indicated that they indeed were derived from the loxP-neo4-loxP-EGFP-TWI1 find protocol strain and Cre-recombinase expressed in the CRE556 side of the pair was transported to the loxP-neo4-loxP-EGFP-TWI1 side and efficiently

induced neo4 excision. Only one clone failed to produce any PCR products. This clone could be either derived from the CRE556 strain or from progeny cells that we could not correctly identify by the growth assay in the presence of CdCl2. Therefore, the method we established here can efficiently identify parental cells derived from a loxP-possessing strain. To assess the correct excision of the neo4 cassette in these clones, they were crossed with the wild-type strain CU428 and EGFP-Twi1p expression was observed. In all 3 clones (#1, #11 and #13 in Fig. 4B) analyzed, EGFP-Twi1p was exclusively expressed during conjugation and was localized to the macronucleus. EGFP-Twi1p localization of clone #1 is shown in Fig. 5. The expression of EGFP indicated that neo4 was most likely excised precisely at the two loxP sites because imprecise excision might cause a frame-shift that abolishes EGFP-Twi1p expression.